Man pages for haimbar/edgefinder
Detect Edges in Sparse Co-expression Graphs
| clusteringCoef | Calculate the clustering coefficient of each node. |
| collapsedGraph | Return an adjacency matrix after collapsing clusters into... |
| DUP | Gene Expression data for the Duplication group |
| edgefinder | Detect edges in co-expression datasets. |
| graphComponents | Find clusters, and return node characteristics. |
| plotBitmapCC | Edge-indicator bitmap plot. |
| plotCluster | Plot cluster network |
| plotDegCC | Plot the degree of nodes versus the degree times the... |
| plotMixture | Plot the histogram of the data and the fitted mixture... |
| shortestPathDistance | Return a Matrix with the shortest path distance between nodes... |
| shortSummary | Print a short summary of the fitted mixture model. |
| SIM | Simulated gene Expression data using the huge package |
| summarizeClusters | Show cluster characteristics. |
| WT | Gene Expression data for the WildType group |
