summarizeClusters: Show cluster characteristics.
In haimbar/edgefinder: Detect Edges in Sparse Co-expression Graphs
Description
Usage
Arguments
Value
Examples
Description
Takes an object obtained from graphComponents and prints and returns summary statistics.
Usage
1
summarizeClusters(clustersInfo)
Arguments
clustersInfo
Obtained from graphComponents.
Value
A matrix with cluster number, number of nodes, and fivenum summaries for the degrees of nodes in the cluster, and the percentage of edges that are within the cluster.
Examples
1
2
3
4
data(WT)
WTres <- edgefinder(WT, ttl = "Wild Type")
WTComp <- graphComponents(WTres$AdjMat)
(summtab <- summarizeClusters(WTComp))
haimbar/edgefinder documentation built on Dec. 20, 2021, 2:45 p.m.
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Description Usage Arguments Value Examples
Description
Takes an object obtained from graphComponents and prints and returns summary statistics.
Usage
1 | summarizeClusters(clustersInfo)
|
Arguments
clustersInfo |
Obtained from graphComponents. |
Value
A matrix with cluster number, number of nodes, and fivenum summaries for the degrees of nodes in the cluster, and the percentage of edges that are within the cluster.
Examples
1 2 3 4 | data(WT)
WTres <- edgefinder(WT, ttl = "Wild Type")
WTComp <- graphComponents(WTres$AdjMat)
(summtab <- summarizeClusters(WTComp))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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