collapsedGraph: Return an adjacency matrix after collapsing clusters into...
In haimbar/edgefinder: Detect Edges in Sparse Co-expression Graphs
Description
Usage
Arguments
Value
Examples
Description
Takes an object obtained from graphComponents and prints summary statistics.
Usage
1
collapsedGraph(A, clustersInfo)
Arguments
A
An adjacency Matrix.
clustersInfo
Obtained from graphComponents
Value
A weighted adjacency matrix between clusters and unclustered nodes.
Examples
1
2
3
4
5
6
data(WT)
WTres <- edgefinder(WT, ttl = "Wild Type")
rownames(WTres$AdjMat) = rownames(WT)
WTComp <- graphComponents(WTres$AdjMat)
Adj1 <- collapsedGraph(WTres$AdjMat, WTComp) > 0
plotBitmapCC(Adj1,showMinDegree = 2)
haimbar/edgefinder documentation built on Dec. 20, 2021, 2:45 p.m.
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Description Usage Arguments Value Examples
Description
Takes an object obtained from graphComponents and prints summary statistics.
Usage
1 | collapsedGraph(A, clustersInfo)
|
Arguments
A |
An adjacency Matrix. |
clustersInfo |
Obtained from graphComponents |
Value
A weighted adjacency matrix between clusters and unclustered nodes.
Examples
1 2 3 4 5 6 | data(WT)
WTres <- edgefinder(WT, ttl = "Wild Type")
rownames(WTres$AdjMat) = rownames(WT)
WTComp <- graphComponents(WTres$AdjMat)
Adj1 <- collapsedGraph(WTres$AdjMat, WTComp) > 0
plotBitmapCC(Adj1,showMinDegree = 2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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