README.md

In hancockinformatics/BacterialToolkit: Functions for working with bacterial projects

BacterialToolkit

Collection of Functions for Working on Bacterial Projects

Current functions

• bt_gtf_cleaner - Produces a tidy data frame from a P. aeruginosa GTF file. Supports PAO1, PA14, and LESB58.
• bt_get_files - Create a named list of files which can easily be read into a lists of data frames with purrr:map(~read.csv(.)).
• bt_test_enrichment - Performs Fisher's Exact Test on a query set of genes, given a gene set of interest.
• bt_tidy_gage - Creates a tidy data frame based on Gage results, and filters on q-value.

Installation

install.packages("devtools")
library(devtools)
install_github("https://github.com/hancockinformatics/BacterialToolkit")

hancockinformatics/BacterialToolkit documentation built on Nov. 4, 2019, 1:27 p.m.