bt_test_enrichment: bt_test_enrichment
In hancockinformatics/BacterialToolkit: Functions for working with bacterial projects
Description
Usage
Arguments
Value
Author(s)
References
See Also
View source: R/bt_test_enrichment.R
Description
This function is designed to perform enrichment on a list of
genes of interest, comparing to some specified background. Uses Fisher's
Exact Test for p-value.
Usage
1
bt_test_enrichment(query_genes, enrichment_set, total_genes)
Arguments
query_genes
Genes to be tested for enrichment.
enrichment_set
Genes associated with a function/pathway.
total_genes
Total number of genes.
Value
Raw p-value resulting from call to stats::fisher.test().
Author(s)
Travis Blimkie
References
None.
See Also
https://github.com/hancockinformatics/BacterialToolkit
hancockinformatics/BacterialToolkit documentation built on Nov. 4, 2019, 1:27 p.m.
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Description Usage Arguments Value Author(s) References See Also
View source: R/bt_test_enrichment.R
Description
This function is designed to perform enrichment on a list of genes of interest, comparing to some specified background. Uses Fisher's Exact Test for p-value.
Usage
1 | bt_test_enrichment(query_genes, enrichment_set, total_genes)
|
Arguments
query_genes |
Genes to be tested for enrichment. |
enrichment_set |
Genes associated with a function/pathway. |
total_genes |
Total number of genes. |
Value
Raw p-value resulting from call to stats::fisher.test().
Author(s)
Travis Blimkie
References
None.
See Also
https://github.com/hancockinformatics/BacterialToolkit
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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