bt_gtf_cleaner: bt_gtf_cleaner
In hancockinformatics/BacterialToolkit: Functions for working with bacterial projects
Description
Usage
Arguments
Value
Author(s)
References
See Also
View source: R/bt_gtf_cleaner.R
Description
Given an input GTF file (Pseudomonas aeruginosa), separates and
cleans columns, returning a clean and tidy data frame. Only returns locus
tag, gene name, description, start, end, and strand columns. Only supports
PAO1, PA14, and LESB58. Uses a single regex to match and extract locus tag
for all three strains.
Usage
1
bt_gtf_cleaner(gtf_file)
Arguments
gtf_file
Path to GTF/GFF file to be cleaned.
Value
Tidy data frame of annotations.
Author(s)
Travis Blimkie
References
None.
See Also
https://github.com/hancockinformatics/BacterialToolkit
hancockinformatics/BacterialToolkit documentation built on Nov. 4, 2019, 1:27 p.m.
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Description Usage Arguments Value Author(s) References See Also
View source: R/bt_gtf_cleaner.R
Description
Given an input GTF file (Pseudomonas aeruginosa), separates and cleans columns, returning a clean and tidy data frame. Only returns locus tag, gene name, description, start, end, and strand columns. Only supports PAO1, PA14, and LESB58. Uses a single regex to match and extract locus tag for all three strains.
Usage
1 | bt_gtf_cleaner(gtf_file)
|
Arguments
gtf_file |
Path to GTF/GFF file to be cleaned. |
Value
Tidy data frame of annotations.
Author(s)
Travis Blimkie
References
None.
See Also
https://github.com/hancockinformatics/BacterialToolkit
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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