getCNAlabel: getCNAlabel

In hanjunwei-lab/CNA2Subpathway: Identification of Dysregulated Subpathway Driven by Copy Number Alteration

Description

The function getCNAlabel used to discretize the CNA profile to a binary matrix.

Usage

getCNAlabel(CNAprofile, ampGene, delGene)

Arguments

CNAprofile	Copy Number Alteration profile
ampGene	A vector of strings,the gene symbol of amplified genes
delGene	A vector of strings,the gene symbol of deleted genes

Value

A binary matrix

Examples

# obtain Copy Number Alteration profile data
CNAP<-GetExampleData("CNAP")
head(CNAP[1:10,1:10])
# obtion amplified genes
ampGene<-GetExampleData("ampGene")
# obtion deleted genes
delGene<-GetExampleData("delGene")
# Obtin the CNA label.
CNAlabelresult<-getCNAlabel(CNAP,ampGene,delGene)
# get the result of the getCNAlabel function
CNAlabelresult<-GetExampleData("CNAlabelresult")
# view first ten genes and ten sample of the label
head(CNAlabelresult[1:10,1:10])

hanjunwei-lab/CNA2Subpathway documentation built on Jan. 28, 2021, 6:56 p.m.