plotDiscovermap: plotDiscovermap
In hanjunwei-lab/CNA2Subpathway: Identification of Dysregulated Subpathway Driven by Copy Number Alteration
Description
Usage
Arguments
Value
Examples
View source: R/plotDiscovermap.R
Description
we use Copy Number Alterations data to polt discover.
Usage
1
plotDiscovermap(genes, CNAmatrix)
Arguments
genes
A vector of strings. The user intresting and happened CNAs genes symbol.
CNAmatrix
The copy number alterations matrix. It takes the from of a binary matrix. Only 0 ang 1 are allowed as values.
Value
Groupwise test of the discover result
Examples
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9
# load depend package
require(discover)
# input gene
genes <- c("AKT3","AKT1","CALML5","PIK3CA","PIK3R1","CALM1","CALM3","CALML3")
# get the result of the getCNAlabel function
CNAlabelresult<-GetExampleData("CNAlabelresult")
# plot discover
discover<-plotDiscovermap(genes,CNAlabelresult)
plot(discover)
hanjunwei-lab/CNA2Subpathway documentation built on Jan. 28, 2021, 6:56 p.m.
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Description Usage Arguments Value Examples
View source: R/plotDiscovermap.R
Description
we use Copy Number Alterations data to polt discover.
Usage
1 | plotDiscovermap(genes, CNAmatrix)
|
Arguments
genes |
A vector of strings. The user intresting and happened CNAs genes symbol. |
CNAmatrix |
The copy number alterations matrix. It takes the from of a binary matrix. Only 0 ang 1 are allowed as values. |
Value
Groupwise test of the discover result
Examples
1 2 3 4 5 6 7 8 9 | # load depend package
require(discover)
# input gene
genes <- c("AKT3","AKT1","CALML5","PIK3CA","PIK3R1","CALM1","CALM3","CALML3")
# get the result of the getCNAlabel function
CNAlabelresult<-GetExampleData("CNAlabelresult")
# plot discover
discover<-plotDiscovermap(genes,CNAlabelresult)
plot(discover)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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