CalculateDF: Calculate the difference of metabolic subpathway activity
In hanjunwei-lab/crmSubpathway: Identify cancer-related metabolic subpathways

Description Usage Arguments Details Examples

For the metabolic subpathway activity matrix, this method can calculate the difference and significance of the metabolic subpathway activity between disease and normal.

1	CalculateDF(spwmatrix, smaple_class, casename = "", controlname = "")

`spwmatrix`	Metabolic subpathway activity matrix (the result of function 'SubpathwayMatrix'),
`smaple_class`	Sample phenotype vector in metabolic subpathway activity matrix.
`casename`	Disease sample phenotype label.
`controlname`	Control sample phenotype label.

CalculateDF

library(limma)
# Get the metabolic subpathway matrix.
Spwmatrix<-get("Spwmatrix")
spwDF<-CalculateDF(Spwmatrix,colnames(Spwmatrix),"cancer","control")