plotspwheatmap: Plot heat map of the metabolic subpathway activity matrix

In hanjunwei-lab/crmSubpathway: Identify cancer-related metabolic subpathways

Description

According to the threshold of the set P value, The 'plotspwheatmap()' function plots a heat map of the significant metabolic subpathways.

Usage

plotspwheatmap(
  DF_result,
  PValue_threshold = 0.01,
  main = "",
  show.rownames = TRUE,
  show.colnames = TRUE,
  fontsize = 10,
  fontsize.row = 10,
  fontsize.col = 10,
  cluster_rows = FALSE,
  cluster_cols = FALSE,
  scale = "none"
)

Arguments

DF_result	A list of result data generated by function 'CalculateDF()'.
PValue_threshold	Threshold for screening significant metabolic subpathways.
main	an overall title for the heatmap.
show.rownames	Boolean specifying if row names are be shown.
show.colnames	Boolean specifying if column names are be shown.
fontsize	Base fontsize for the plot (default: 10).
fontsize.row	Fontsize for rownames (default: 10).
fontsize.col	Fontsize for colnames (default: 10).
cluster_rows	boolean values determining if rows should be clustered or hclust object.
cluster_cols	boolean values determining if columns should be clustered or hclust object.
scale	Character indicating if the values should be centered

Details

plotspwheatmap

Value

A heat map. ##' @examples require(pheatmap) DFspw<-get("DFspw") plotspwheatmap(DFspw,cluster_rows = TRUE,show.colnames = FALSE)

hanjunwei-lab/crmSubpathway documentation built on Jan. 26, 2021, 8:50 a.m.