aeReport: Adverse Events Report

In harrelfe/rreport: Research Reporting Package

Description

Generate reports to summarize adverse events.

Usage

  aeReport(data = NULL, vars, treat, time,
    times = sort(unique(time)), id = NULL,
    plotprop = FALSE, plotkm = TRUE, etimedata = NULL,
    tables = TRUE, times.tables = times,
    forceBinary = FALSE, ylim = c(0, 1), h = 5, w = 5,
    digits = 3)

Arguments

data	data.frame. Data used for report.
vars	character vector. Variables to include in analysis.
treat	factor vector. Vector of treatment group for each record.
time	character. Name of time variable within dataset.
times	numeric vector. Times used to subset data.
id	character. Name of id variable within dataset.
plotprop	logical. If ‘TRUE’ plot proportions of adverse events.
plotkm	logical. If ‘TRUE’ plot Kaplan-Meier estimates of cumulative probabilities of adverse events.
etimedata	list. List of time data, containing treatment, event time and event indicator for each variable.
tables	logical. If ‘TRUE’ generate summary tables of adverse events by times found in times.tables.
times.tables	numeric vector. Times used to generate summary tables.
forceBinary	logical. Set to ‘TRUE’ if variables are binary.
ylim	numeric vector. Set y-axis limits.
h	numeric. Height of plot. Default is 5in. See setps.
w	numeric. Width of plot. Default is 5in. See setps.
digits	numeric. Number of significant digits to print. Defaults to 3.

Examples

## Not run: 
  load(url('http://biostat.mc.vanderbilt.edu/wiki/pub/Main/Rreport/ssafety.rda'))
  ae <- c('headache', 'ab.pain', 'nausea', 'dyspepsia', 'diarrhea', 'upper.resp.infect', 'coad')
  aeReport(ssafety, ae, 'trx', 'week', id='id', times.tables=c(4,12), forceBinary=TRUE, ylim=c(0,0.15))

## End(Not run)

harrelfe/rreport documentation built on May 17, 2019, 2:48 p.m.