mixedvarReport: Mixed Variable Report
In harrelfe/rreport: Research Reporting Package

Generate several reports.

  baselineReport(...)

  mixedvarReport(data, vars, panel, treat,
    longPanel = panel, ncaption = "", tableref = panel,
    test = TRUE, exclude1 = TRUE, long = TRUE,
    npct = c("numerator", "both", "denominator", "none"),
    prmsd = FALSE,
    contDataPlotType = c("bp", "dot", "raw"), nmin = 15,
    categDataPlot = !Odotchart,
    cdfPlot = length(levels(data[[treat]])) <= 2,
    contDataPlot = !cdfPlot, Ohist = TRUE,
    Odotchart = TRUE, bpPrototype = FALSE, digits = 3,
    append = FALSE, Major = NULL, MajorLabel = "",
    Majorvars = NULL, cexMajor = 0.7, continuous = 10,
    nx = 15, keyloc = list(x = 0.8, y = 0.02),
    landscape = FALSE, size = NULL, longtable = FALSE,
    h = 5, w = 6, lines.page = 40, clearPlots = FALSE,
    auxCol = NULL, prn = TRUE, ...)

`data`	data.frame. Data used for report.
`vars`	character vector. Variables to include in analysis.
`panel`	character. Name for panel.
`treat`	character. Name of treatment variable within dataset.
`longPanel`	character. Long name for panel.
`ncaption`	character. Caption text.
`tableref`	character. Passed to the function `latex`.
`test`	logical. See `summary.formula`.
`exclude1`	logical. See `summary.formula`.
`long`	logical. See `summary.formula`.
`npct`	character. See `summary.formula`.
`prmsd`	logical. See `summary.formula`.
`contDataPlotType`	character. Continuous data plot type should be one of the following: ‘bp’, ‘dot’, or ‘raw’.
`nmin`	numeric. See `summary.formula`.
`categDataPlot`	logical. Set to ‘TRUE’ to output a categorical data plot in the latex table being generated.
`cdfPlot`	logical. Set to ‘TRUE’ to output a CDF plot in the latex table being generated; only available to closed report.
`contDataPlot`	logical. Set to ‘TRUE’ to output a continous data plot in the latex table being generated; only available to closed report.
`Ohist`	logical. Set to ‘TRUE’ to output a histogram of the continuous variables.
`Odotchart`	logical. See `summary.formula`.
`bpPrototype`	logical. If ‘TRUE’ and `contDataPlotType` is ‘bp’, output a prototype box-percentile plot.
`digits`	numeric. Significant digits, passed to the function `latex`.
`append`	logical. If ‘TRUE’ output will be appended instead of overwritten.
`Major`	character vector. Major categorical variables for site.
`MajorLabel`	character. Label for major stratification variable(s).
`Majorvars`	character vector. Major categorical variables for site. (NEED TO DISTINGUISH)
`cexMajor`	numeric. Plotting text size magnification, used for boxplots.
`continuous`	numeric. See `summary.formula`.
`nx`	numeric. THIS PARAMETER IS NOT USED.
`keyloc`	numeric vector. Key placement on the categorical data plot, see `summary.formula`.
`landscape`	logical. See `latex`.
`size`	character. See `latex`.
`longtable`	logical. See `latex`.
`h`	numeric. Height of plot, only used for categorical data plot. Default is 5in. See `setps`.
`w`	numeric. Width of plot, only used for categorical data plot. Default is 6in. See `setps`.
`lines.page`	numeric. See `latex`.
`clearPlots`	logical. Set to ‘TRUE’ to clear the page after each plot.
`auxCol`	list. See `summary.formula`.
`prn`	logical. See `summary.formula`.
`...`	Additional arguments, passed to `plot`. Only used for categorical data plot.

Generate a summary table of treatment against all variables.
Plot categorical data if categDataPlot is ‘TRUE’.
Plot continuous data if contDataPlot is ‘TRUE’.
Include a prototype box-percentile plot if contDataPlotType. is ‘bp’ and bpPrototype is ‘TRUE’.
Plot the cumulative distribution function.
Plot a histogram for categorical variables if Ohist is ‘TRUE’.
Print a box-percentile plot for each variable stratified by Major.