API for hase62/Neoantimon
Neoantimon: An R package for automatic identification of tumor-specific neoantigens from sequencing data

Global functions
CCFP.Calc Source code
CheckRequiredColumns Source code
CheckRequiredFiles Source code
CheckRequiredFiles2 Source code
GenerateIndelSeq Source code
GenerateListForCCFP Source code
GenerateListForGetRNASeq Source code
GenerateMutatedFragments Source code
GenerateMutatedSeq Source code
GenerateSVFusionSeq Source code
GetRNAseq Source code
GetRNAseq_indel Source code
GetRatio Source code
InstallRefFlat Man page Source code
InstallRefMrnaFile Man page Source code
InstallSampleFiles Man page Source code
InstallSamtools Man page Source code
MainINDELClass1 Man page Source code
MainINDELClass2 Man page Source code
MainMergeINDELSVClass1 Man page Source code
MainMergeINDELSVClass2 Man page Source code
MainMergeSNVClass1 Man page Source code
MainMergeSNVClass2 Man page Source code
MainSNVClass1 Man page Source code
MainSNVClass2 Man page Source code
MainSVFUSIONClass1 Man page Source code
MainSVFUSIONClass2 Man page Source code
MainSeqFragmentClass1 Man page Source code
MainSeqFragmentClass2 Man page Source code
RNAExpression Source code
SettingNetMHCIIpan Source code
SettingNetMHCpan Source code
TestAnalysis Man page Source code
apply2 Source code
calc_ccfp Source code
sample_copynum Man page
sample_hla_table_c1 Man page
sample_hla_table_c2 Man page
sample_result_INDEL_CLASS1_ALL Man page
sample_result_INDEL_CLASS2_ALL Man page
sample_result_SNV_CLASS1_ALL Man page
sample_result_SNV_CLASS2_ALL Man page
sample_rna_exp Man page
sample_sv_bnd Man page
sample_vcf Man page
tryCatch2 Source code
hase62/Neoantimon documentation built on April 21, 2018, 1:21 p.m.