CalculatePriorityScores: Calculate priority scores
In hase62/Neoantimon: Neoantimon: A multifunctional R package for identification of tumor-specific neoantigens
View source: R/FunctionsCalculatePriorityScores.R
CalculatePriorityScores R Documentation
Calculate priority scores
Description
Calculate priority scores
Usage
CalculatePriorityScores(result, useRNAvaf = FALSE)
Arguments
result
A results file generated from main functions
useRNAvaf
To indicate whether this function uses DNA VAF or RNA VAF for the calculation.
Value
P_I: Priority score using the EL.
P_R: Priority score using the percentage of rank affinity.
P: Priority score implemented in MuPeXI (Bjerregaard et al. 2017).
hase62/Neoantimon documentation built on Sept. 21, 2023, 4:23 p.m.
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View source: R/FunctionsCalculatePriorityScores.R
| CalculatePriorityScores | R Documentation |
Calculate priority scores
Description
Calculate priority scores
Usage
CalculatePriorityScores(result, useRNAvaf = FALSE)
Arguments
result |
A results file generated from main functions |
useRNAvaf |
To indicate whether this function uses DNA VAF or RNA VAF for the calculation. |
Value
P_I: Priority score using the EL.
P_R: Priority score using the percentage of rank affinity.
P: Priority score implemented in MuPeXI (Bjerregaard et al. 2017).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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