getUID: A function that takes a protien/genelist and returns the...

In hawkdidy/prodata: Builds Protien Sequence And Subregion Molecular Weight Database.

Description

This function will allow you to enter a list of protien/gene names and convert the into NCBI unique IDs. It will return a list. The first element will be your UIDs the second element will have the protien/gene names that were not matched to an ID.

Usage

getUID(protien_gene_list,
  baseterm = "[Protein Name] AND Mus musculus[Organism]", db = "protien")

Arguments

protien_gene_list	List of protiens or genes.
baseterm	The term that you would like attached to your protien/gene names to make the search as accurate as possible. I.e. "[Protein Name] AND Mus musculus[Organism]"
db	The database of the NCBI that you would like to access. I.e. protien

Examples

uids <- getUID(protien_gene_list, baseterm = "[Protein Name] AND Mus musculus[Organism]", db = "protien" )

hawkdidy/prodata documentation built on May 17, 2019, 3:06 p.m.