readPTM: A function that takes an output file from the Uniprot command...

In hawkdidy/prodata: Builds Protien Sequence And Subregion Molecular Weight Database.

Description

This function takes an output file from the command line tool built to access uniprot. This tool takes a file generated by the unip function. You must request the data be returned as gff format. Sometimes there is a header that must be removed before the gff data. This tool can be found here https://github.com/jdrudolph/uniprot. It will return this as an R dataframe.

Usage

readPTM(ptmfile = "output.txt")

Arguments

ptmfile

Output file from uniprot command line tool

Examples

Command line Usage:
uniprot retrieve -f gff uniprot.txt output.txt 

ptmdf <- readPTM(ptmfile = 'output.txt')

hawkdidy/prodata documentation built on May 17, 2019, 3:06 p.m.