Man pages for hbmcsysbio/hbmcbioR
for fafu hbmc sysbioer learn more
| addmotifLogo | make a html file |
| atac_peakanno | ATACseq peak annotation |
| autoseed_motif_disc | Motif Discovery with Autoseed |
| compMotif | find the de novo motif with known TFs motif |
| copMotif | chose the unique motif matrix |
| dot-addmotifLogorow | make html index |
| dot-da_sim | find motif information in database |
| dot-length_to_40bp | adjust sequence length to 40bp in order to use autoseed for... |
| dot-pfm_trim | trim low IC bases flanking a pfm |
| heatmap_kmer | you can make a heatmap to see your fasta file kmer |
| is_from_adaptor | Check if a sequence is from Truseq adaptor |
| motif_counts_ | motif enrichment analysis for a target library |
| motif_database_html | identify gave consensus or universalmotif motif to get TF... |
| motif_from_JP | make a pcm to the most similar known TFs motif name |
| motif_get_name | match your motif to the most similar known motif form... |
| motif_list_sample | you can compare two fasta file include the enrichment of your... |
| plotEnrich | drow a fold changes and -log10 picture |
| plot_motif_enrichment | plot motif enrichment of a target file or sequences |
| splitFile | split the total matrix file |
