is_from_adaptor: Check if a sequence is from Truseq adaptor
In hbmcsysbio/hbmcbioR: for fafu hbmc sysbioer learn more
View source: R/zfj_misc_utilities_202111.R
is_from_adaptor R Documentation
Check if a sequence is from Truseq adaptor
Description
Check if a sequence is from Truseq adaptor
Usage
is_from_adaptor(
test_seq = "ACGTGTGCTCTTC",
lib_seq = "AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATCGGAAGAGCACACGTCTGAACTCCAGTCACnnnnnnnnATCTCGTATGCCGTCTTCTGCTTG"
)
Arguments
test_seq
the sequence or motif consensus to compare with Truseq ligand
lib_seq
the sequence of full length Truseq ligand
Value
the result of alignment of test_seq, lib_seq, and the reverse complement of test_seq
hbmcsysbio/hbmcbioR documentation built on April 14, 2022, 9:59 p.m.
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View source: R/zfj_misc_utilities_202111.R
| is_from_adaptor | R Documentation |
Check if a sequence is from Truseq adaptor
Description
Check if a sequence is from Truseq adaptor
Usage
is_from_adaptor(
test_seq = "ACGTGTGCTCTTC",
lib_seq = "AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATCGGAAGAGCACACGTCTGAACTCCAGTCACnnnnnnnnATCTCGTATGCCGTCTTCTGCTTG"
)
Arguments
test_seq |
the sequence or motif consensus to compare with Truseq ligand |
lib_seq |
the sequence of full length Truseq ligand |
Value
the result of alignment of test_seq, lib_seq, and the reverse complement of test_seq
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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