plot_motif_enrichment: plot motif enrichment of a target file or sequences
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View source: R/yz_motif_enrich_fjEdit202111.R
plot_motif_enrichment R Documentation
plot motif enrichment of a target file or sequences
Description
plot motif enrichment of a target file or sequences
Usage
plot_motif_enrichment(seqs, pwmlist, threads = 1)
Arguments
seqs
the sequence file, or a character of sequences
pwmlist
a PWMatrixList containing the pwm of motifs
Value
a ggplot of the enrichment of each motif
Examples
pwmlist <- readRDS("/wrk/zhu/test/motif_curation/curated_30N_motif_pwmlist_20211014.rds")
seqs="/wrk/wenchenjin/work/Chenjin1_1__ATI_ara.cell_1/pre_processed/cleaned/B8_20_Mock__root__conc_0nM__time_2h__30n.gz"
tt= plot_motif_enrichment(seqs,pwmlist)
hbmcsysbio/hbmcbioR documentation built on April 14, 2022, 9:59 p.m.
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View source: R/yz_motif_enrich_fjEdit202111.R
| plot_motif_enrichment | R Documentation |
plot motif enrichment of a target file or sequences
Description
plot motif enrichment of a target file or sequences
Usage
plot_motif_enrichment(seqs, pwmlist, threads = 1)
Arguments
seqs |
the sequence file, or a character of sequences |
pwmlist |
a PWMatrixList containing the pwm of motifs |
Value
a ggplot of the enrichment of each motif
Examples
pwmlist <- readRDS("/wrk/zhu/test/motif_curation/curated_30N_motif_pwmlist_20211014.rds")
seqs="/wrk/wenchenjin/work/Chenjin1_1__ATI_ara.cell_1/pre_processed/cleaned/B8_20_Mock__root__conc_0nM__time_2h__30n.gz"
tt= plot_motif_enrichment(seqs,pwmlist)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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