atac_peakanno: ATACseq peak annotation
In hbmcsysbio/hbmcbioR: for fafu hbmc sysbioer learn more
atac_peakanno R Documentation
ATACseq peak annotation
Description
ATACseq peak annotation
Usage
atac_peakanno(
peaks,
txdb,
rnaseqtxt,
tss_region = 3000,
prefix,
tfname = "WRKY"
)
Arguments
peaks
the peak call file from the fseq2 of GRanges object
txdb
you interested species annotation genome file of TxDb object
tss_region
the number of base pair from tss ,default is 3000
prefix
the name for save your result
tfname
the TF family name can be plot with RNA-seq and ATAC-seq,default is WRKY
hbmcsysbio/hbmcbioR documentation built on April 14, 2022, 9:59 p.m.
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| atac_peakanno | R Documentation |
ATACseq peak annotation
Description
ATACseq peak annotation
Usage
atac_peakanno( peaks, txdb, rnaseqtxt, tss_region = 3000, prefix, tfname = "WRKY" )
Arguments
peaks |
the peak call file from the fseq2 of GRanges object |
txdb |
you interested species annotation genome file of TxDb object |
tss_region |
the number of base pair from tss ,default is 3000 |
prefix |
the name for save your result |
tfname |
the TF family name can be plot with RNA-seq and ATAC-seq,default is WRKY |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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