plot_ideogram: Ideogram of SConES results.
In hclimente/blur: Visualization utilities after using martini
Description
Usage
Arguments
Value
References
Description
Create a circular ideogram of the SConES results using the circlize package (Gu et al., 2014).
Usage
1
plot_ideogram(cones, genome = "hg19")
Arguments
cones
Output from SConES.
genome
Abbreviations of the genome to use: hg19 for human (default), mm10 for mouse, etc. Argument to be passed to
circos.initializeWithIdeogram species.
Value
A circular ideogram, including the manhattan plot, and the interactions between the selected SNPs.
References
Gu, Z., Gu, L., Eils, R., Schlesner, M., & Brors, B. (2014). circlize Implements and enhances circular visualization in R.
Bioinformatics (Oxford, England), 30(19), 2811-2. https://doi.org/10.1093/bioinformatics/btu393
hclimente/blur documentation built on Nov. 28, 2020, 11:12 a.m.
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Description Usage Arguments Value References
Description
Create a circular ideogram of the SConES results using the circlize package (Gu et al., 2014).
Usage
1 | plot_ideogram(cones, genome = "hg19")
|
Arguments
cones |
Output from |
genome |
Abbreviations of the genome to use: hg19 for human (default), mm10 for mouse, etc. Argument to be passed to
|
Value
A circular ideogram, including the manhattan plot, and the interactions between the selected SNPs.
References
Gu, Z., Gu, L., Eils, R., Schlesner, M., & Brors, B. (2014). circlize Implements and enhances circular visualization in R. Bioinformatics (Oxford, England), 30(19), 2811-2. https://doi.org/10.1093/bioinformatics/btu393
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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