me.test.permutateSamples: Function to calculate a mutual exclusion p-value in a gene...
In hclimente/find.me: Tools to study mutual exclusion in gene alterations
View source: R/me.test.permutateSamples.R
Description
Function to calculate a mutual exclusion p-value in a gene set.
It keeps the number of alterations in a gene fixed, and permutates
the samples to calculate an empirical p-value. The minimum p-value
it will return is 1/n.
Usage
1
me.test.permutateSamples(mutmat, n = 10000)
Arguments
mutmat
matrix, genes as rows, samples as columns
n
integer specifying the number of permutations
hclimente/find.me documentation built on May 17, 2019, 3:08 p.m.
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View source: R/me.test.permutateSamples.R
Description
Function to calculate a mutual exclusion p-value in a gene set. It keeps the number of alterations in a gene fixed, and permutates the samples to calculate an empirical p-value. The minimum p-value it will return is 1/n.
Usage
1 | me.test.permutateSamples(mutmat, n = 10000)
|
Arguments
mutmat |
matrix, genes as rows, samples as columns |
n |
integer specifying the number of permutations |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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