oncoprint: function to create an oncoprint plot
In hclimente/find.me: Tools to study mutual exclusion in gene alterations

Description Usage Arguments

View source: R/oncoprint.R

function to create an oncoprint plot

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oncoprint(A, keys = list(somatic = "MUT", germline = "GERMLINE", amp = "AMP",
  del = "HOMDEL", upreg = "UP", downreg = "DOWN", splicing = "SPLICING"),
  sortGenes = TRUE)

`A`	dataframe containing the alterations
`keys`	list with the following elements: splicing, somatic, germline, amp, del, upreg, downreg
`sortGenes`	boolean whether or not to sort the genes, default TRUE