getSortedMatrix: Function to order the alteration matrix to evidence the...
In hclimente/find.me: Tools to study mutual exclusion in gene alterations
Description
Function to order the alteration matrix to evidence the mutual exclusion pattern.
Usage
1
2
3
getSortedMatrix(M, keys = list(somatic = "MUT", germline = "GERMLINE", amp =
"AMP", del = "HOMDEL", upreg = "UP", downreg = "DOWN", splicing = "SPLICING"),
sortGenes = TRUE)
Arguments
M
mutation matrix
keys
list with the following elements: splicing, somatic,
germline, amp, del, upreg, downreg
sortGenes
boolean whether or not to sort the genes, default TRUE
hclimente/find.me documentation built on May 17, 2019, 3:08 p.m.
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Description
Function to order the alteration matrix to evidence the mutual exclusion pattern.
Usage
1 2 3 | getSortedMatrix(M, keys = list(somatic = "MUT", germline = "GERMLINE", amp =
"AMP", del = "HOMDEL", upreg = "UP", downreg = "DOWN", splicing = "SPLICING"),
sortGenes = TRUE)
|
Arguments
M |
mutation matrix |
keys |
list with the following elements: splicing, somatic, germline, amp, del, upreg, downreg |
sortGenes |
boolean whether or not to sort the genes, default TRUE |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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