Man pages for hd2326/pageRank
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
| accessibility_network | Build Network from Accessibility Peaks. |
| adjust_graph | Re-calculate PageRank |
| aracne_network | Re-format ARACNe Network. |
| bubble_plot | Make Bubbleplot |
| clean_graph | Clean Graph |
| conformation_network | Build Network from Conformation Peaks. |
| diff_graph | Calculate Temporal PageRank from Two Graphs |
| gene_bin | Bin Gene Expression Space |
| get_color_gradient | Generate Color Gradient |
| multiplex_page_rank | Calculate Multiplex PageRank |
| P_dist | Calculate Probability-Based Distance |
| P_graph | Build Probability-Based Network |
| P_null | Build Null Distribution of Probability-Based Distance |
| PX | Marginal Probability Calculation |
| PXPY | Product of Marginal Probability |
| PXY | Joint Probability Calculation |
| time_expmat | Generate Timewise Average Gene Expression |
