clean_graph: Clean Graph

In hd2326/pageRank: Temporal and Multiplex PageRank for Gene Regulatory Network Analysis

Description

Remove graph nodes by residing subgraph sizes, vertex names and PageRank values.

Usage

clean_graph(graph, size = NULL, vertices = NULL, pagerank = NULL)

Arguments

graph	(igraph) The graph to be cleaned.
size	(numeric) Subgraph size cutoff.
vertices	(character) Vertices to be kept.
pagerank	(numeric) PageRank cutoff.

Value

(igraph) Network updated "pagerank" as vertex attribute.

Author(s)

DING, HONGXU ([e-mail])

Examples

library(igraph)
set.seed(1)
graph <- igraph::erdos.renyi.game(100, 0.01, directed = TRUE)
igraph::V(graph)$name <- 1:100
igraph::V(graph)$pagerank <- igraph::page_rank(graph)$vector
clean_graph(graph, size=5)

hd2326/pageRank documentation built on Dec. 18, 2020, 8:44 a.m.