API for heibl/ips
Interfaces to Phylogenetic Software in R

Global functions
DNAbin2index Man page Source code
aliscore Man page Source code
are.tips.consecutive Man page Source code
assembleDataNode Man page Source code
assembleDistributionNode Man page Source code
assembleInitNode Man page Source code
assembleLoggers Man page Source code
assembleOperators Man page Source code
assembleStateNode Man page Source code
code.simple.gaps Man page Source code
collapseUnsupportedEdges Man page Source code
del.miss Man page Source code
deleteEmptyCells Man page Source code
deleteGaps Man page Source code
descendants Man page Source code
eoi Man page Source code
extractBEASTstats Man page Source code
extractMRBAYESstats Man page Source code
findORF Source code
fixNodes Man page Source code
forceEqualTipHeights Man page Source code
formatSet Man page Source code
gblocks Man page Source code
index2DNAbin Man page Source code
ips Man page
ips-package Man page
ips.16S Man page
ips.28S Man page
ips.cox1 Man page
ips.tree Man page
mafft Man page Source code
mafft.merge Man page Source code
matrixBlock Man page Source code
mrbayes Man page Source code
mrbayes.lset Man page Source code
mrbayes.mcmc Man page Source code
mrbayes.prset Man page Source code
multistate Man page
multistateMCMC Man page Source code
multistateML Man page Source code
neighboringPairs Man page Source code
noi Man page Source code
ntip Man page Source code
oi Man page
partitionfinder Man page Source code
pathd8 Man page Source code
phylo2mafft Man page Source code
phylo2mst Man page Source code
pis Man page Source code
prank Man page Source code
raxml Man page Source code
raxml.partitions Man page Source code
rbeauti Man page Source code
rbeauti.taxonset Man page Source code
rc Man page Source code
rc.core Man page
read Man page
read.beast Man page Source code
read.beast.table Man page Source code
read.fas Man page Source code
read.mrbayes Man page Source code
read.nex Man page Source code
read.phy Man page Source code
read.starbeast Man page Source code
read.xml Man page Source code
setClock Man page Source code
setMCMC Man page Source code
sister Man page Source code
splitIntoClades Man page Source code
str2cha Man page Source code
terminal.clades Man page Source code
terminalSisters Man page Source code
tipHeights Man page Source code
traitRate Man page Source code
traitRateOutput Man page Source code
traitRateParams Man page Source code
trimEnds Man page Source code
unlistFirstLevel Man page Source code
unresolve.clade Man page Source code
write.fas Man page Source code
write.nex Man page Source code
write.phy Man page Source code
heibl/ips documentation built on Sept. 23, 2018, 3:22 p.m.