Man pages for hejtmy/fgu-avoidance
Loading, preprocessing and visualising logs from the avoidance box
| add_areas.avoidance.multiple | Adds areas of interest into the positioning data. |
| add_areas.avoidance.single | Adds areas into the positioning data |
| apparatus_image_path | Retuns path to the apparatus image |
| collect_area_presence | Returns times of animal presence in each area of interest |
| collect_crosses | Collects information about each cross in given object |
| collect_freezes | Searches for episodes of freezing behaviour |
| combine_all | Creates a single navr object with all animals combined... |
| create_crosses_vector | Creates a vector of length exp_length which contains number... |
| create_heatmap | Creates heatmap from passed object |
| filter_animals | Filter the fgu.avoidance object for chosen animals |
| get_position_table | Returns positioning data |
| gradient_style | Styling functions for the heatmap and paths |
| load_data | Load data from a particular filepath |
| load_folder | Loads all files from a folder and combines to a large table... |
| plot_area_presence | Plots an image of area presence for avoidance.single |
| plot_crosses | Plots paths for crossings |
| plot_path.avoidance.single | Creates a path graph of a single trial |
| plot_speed.avoidance.single | Plots animal's speed |
| session_results | Basic results to give a report from a single session |
| smooth_positions.avoidance.single | Smooths positioning data |
| smooth_speed.avoidance.single | Smooths speeds |
