Man pages for hemberg-lab/FastSC3
Fast Single-Cell Consensus Clustering
| calc_fjlt | Calculate the FJLT transform |
| constr_D | Construct the D matrix for the FJLT transform |
| constr_H | Construct the H (Hadamard) matrix for the FJLT transform |
| constr_P | Construct the P matrix for the FJLT transform |
| FastSC3-package | A short title line describing what the package does |
| FJLT | Fast-Johnson-Lindenstrauss-Transform (FJLT) |
| fsc3_calc_eigenv.SCESet | Calculate eigenvectors of the transformed distance matrix. |
| fsc3_calc_transfs.SCESet | Calculate transformations of the distance matrices. |
| fsc3_fjlt.SCESet | Fast-Johnson-Lindenstrauss-Transform (FJLT) |
| fsc3_get_buckets_med_exprs | Calculate median feature expression in every bucket |
| fsc3_get_buckets.SCESet | Define buckets of cells based on their signatures |
| fsc3_get_buckets_signatures.SCESet | Calculate average bucket signatures |
| fsc3_get_clusters.SCESet | Reindex cell buckets based on the merged buckets results |
| fsc3_get_features.SCESet | Define a set of genes used for creating cell binary... |
| fsc3_get_signatures_fjlt.SCESet | Create a binary signature for each cell |
| fsc3_get_signatures.SCESet | Create a binary signature for each cell |
| fsc3_norm_kernel.SCESet | Calculate doubly-stochastic approximation of the PSD matrix |
| fsc3_select_repr_cells.SCESet | Reduce the original dataset by using cell buckets |
| fsc3_set_features.SCESet | Title |
| ftransformation | Distance matrix transformation |
| pad_matrix_with_zeros | Calculate the FJLT transform |
| plot_sankey | Plot Sankey diagram comparing two clusterings |
| random_forest | Run random forest prediction |
| ssNystrom | Calculate approximate eigenvectors |
| support_vector_machines | Run support vector machines ('SVM') prediction |
