fsc3_get_features.SCESet: Define a set of genes used for creating cell binary...

In hemberg-lab/FastSC3: Fast Single-Cell Consensus Clustering

Description

The important genes (hyperplanes) are defined as differentially expressed genes identified using M3Drop (Michaelis-Menten Modelling of Dropouts for scRNASeq, http://bioconductor.org/packages/M3Drop). A 'data.frame' with the genes and corresponding p and q values is written to the 'hyperplanes' item of the 'sc3' slot of the input object.

Usage

fsc3_get_features.SCESet(object, n_genes = 100, pct_dropout_min = 20,
  pct_dropout_max = 80, suppress_plot = T)

## S4 method for signature 'SCESet'
fsc3_get_features(object, n_genes = 100,
  pct_dropout_min = 20, pct_dropout_max = 80, suppress_plot = T)

Arguments

object	an object of 'SCESet' class
n_genes	number of the genes to be returned

Value

an object of 'SCESet' class

hemberg-lab/FastSC3 documentation built on May 17, 2019, 3:42 p.m.