fsc3_calc_eigenv.SCESet: Calculate eigenvectors of the transformed distance matrix.
In hemberg-lab/FastSC3: Fast Single-Cell Consensus Clustering

Description Usage Arguments Details Value

This function calculates eigenvectors of the transformed distance matrices contained in the transformation item of the object@sc3 slot. It then populates back the transformations item the calculated eigenvectors.

fsc3_calc_eigenv.SCESet(object)

## S4 method for signature 'SCESet'
fsc3_calc_eigenv(object)

object

an object of 'SCESet' class

Eigenvectors are calculated by using the SS-Nystrom approximation. Wang, S., Zhang, C., Qian, H. and Zhang, Z. Improving the Modified NystroM Method Using Spectral Shifting. in Proceedings of the 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining 611–620 (ACM, 2014).

an object of 'SCESet' class

hemberg-lab/FastSC3 documentation built on May 17, 2019, 3:42 p.m.