coa: CoA data from PureHoney.
In hemoshear/assayr2: Tools for analyzing assay data
Description
Analyzed data from PureHoney plates 541 and 542, this data has been through the QC process and
is ready to be analyzed and plotted for results visualization.
Usage
1
Format
A data frame with 30 variables:
runstudy run id
sample_idstudy level unique sample id
cell_typetype of cell
donorcell donor name
donor_phenophenotype of cell donor
mediabase media used
tx_runpaste of tx_cmpd and run
tx_treatchallenge condition
tx_cmpdcompound id
tx_concconcentration of tx_cmp in uM
imaging_plateculture/imaging plate id
imaging_wellculture/imaging well id
assay_plateassay plate id
assay_prunassay read/run id
assay_wellassay well id
plate_runpaste of assay_plate and assay_prun
contentsassay_plate level sample id
targanalyte/target measured
iso_labelis targ isotopicly labeled?
curve_idstandard curve used
curve_plottarg base name, used for plotting both species together
concconcentration targ in nM
in_rangeis conc in the range of detection?
recovfraction of internal standard measured
conc_correctedconc / recov
nuc_wellcount of nuclei per imaging_plate:imaging_well
cell_vol_well_Lnuc_well * (3.4 * 10^-12) for hepatocytes
conc_nmolsconc * (.0001 + cell_volume_well_L)
conc_incell_nMconc_nmols / cell_volume_well_L
conc_incell_uMconc_incell_nM / 1000
For futher details talk to Nate (nathan.day@hemoshear.com)
hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Analyzed data from PureHoney plates 541 and 542, this data has been through the QC process and is ready to be analyzed and plotted for results visualization.
Usage
1 |
Format
A data frame with 30 variables:
runstudy run id
sample_idstudy level unique sample id
cell_typetype of cell
donorcell donor name
donor_phenophenotype of cell donor
mediabase media used
tx_runpaste of
tx_cmpdandruntx_treatchallenge condition
tx_cmpdcompound id
tx_concconcentration of
tx_cmpin uMimaging_plateculture/imaging plate id
imaging_wellculture/imaging well id
assay_plateassay plate id
assay_prunassay read/run id
assay_wellassay well id
plate_runpaste of
assay_plateandassay_pruncontentsassay_platelevel sample idtarganalyte/target measured
iso_labelis
targisotopicly labeled?curve_idstandard curve used
curve_plottargbase name, used for plotting both species togetherconcconcentration
targin nMin_rangeis
concin the range of detection?recovfraction of internal standard measured
conc_correctedconc / recovnuc_wellcount of nuclei per
imaging_plate:imaging_wellcell_vol_well_Lnuc_well * (3.4 * 10^-12)for hepatocytesconc_nmolsconc * (.0001 + cell_volume_well_L)conc_incell_nMconc_nmols / cell_volume_well_Lconc_incell_uMconc_incell_nM / 1000
For futher details talk to Nate (nathan.day@hemoshear.com)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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