Files in hemoshear/assayr2
Tools for analyzing assay data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/.DS_Store
R/addin.R R/assayr2.R R/box_utils.R R/check.R R/data.R R/ggheat.R R/magpix_utils.R R/model_geoms.R R/model_tools.R R/pcr_utils.R R/purehoney_utils.R R/qc.R R/qc_database.R R/readers.R R/sigmoid.R R/treatment_labels.R R/utils.R README.Rmd README.md data-raw/HST_Explorer_WhiteList.R data-raw/rds_checker.R
data/coa.rda
data/curves.rda
data/detect_outliers_negative_cases.rda
data/detect_outliers_positive_cases.rda
data/drcs.rda
data/explorer_wl.rda
data/isobutyryl_curves.rda
data/magpix_express_correct_data.rda
data/nrmsd_qc_negative_cases.rda
data/nrmsd_qc_positive_cases.rda
data/poor_ic50_estimate_negative_cases.rda
data/poor_ic50_estimate_positive_cases.rda
data/unbounded_parameter_ci_test_case.rda
data/unsaturated_curve_negative_cases.rda
data/unsaturated_curve_positive_cases.rda
exec/drc-qc-watcher.sh
exec/initial_drc_qc_database_setup.R
inst/.DS_Store
inst/assayr2_hex.R
inst/assayr2_hex.png
inst/extdata/CFX_example.csv
inst/extdata/FLUOstar_ATP_example.xlsx
inst/extdata/FLUOstar_Albumin_example.xlsx
inst/extdata/HEM0301-1_plt1_10_20180109_110132.csv
inst/extdata/HEM0301-1_plt2_11_20180109_120338.csv
inst/extdata/HEM030101_plt3_12_20180109_123233.csv
inst/extdata/Magpix_example.csv
inst/extdata/NileRed_Moldev_example.txt
inst/extdata/PAD0304_NileRed_Discards.csv
inst/extdata/PH_Assay_example.xlsx
inst/extdata/PH_raw_example.csv
inst/extdata/PureHoney_Carnitines.RDS
inst/extdata/SMAA_Moldev_example.txt
inst/extdata/SMAD_Quant_example.txt
inst/extdata/device_layout_example.xlsx
inst/extdata/find_plates_testfile.xlsx
inst/extdata/magpix_plate1_testfile.csv
inst/extdata/magpix_plate2_testfile.csv
inst/meta_cleaned.RDS
inst/rstudio/addins.dcf
man/RMAX.Rd man/WES.Rd man/activity_area.Rd man/add_targets.Rd man/add_treatments.Rd man/adj_activity_area.Rd man/analytes.Rd man/anyBaseToDecimal.Rd man/apply_curve_matches.Rd man/assayr2-package.Rd man/box_archive.Rd man/box_browse.Rd man/box_dl_pure_honey.Rd man/box_fetch2.Rd man/box_push2.Rd man/check_and_match.Rd man/check_names.Rd man/check_values.Rd man/chr_to_int.Rd man/closest_matches.Rd man/coa.Rd man/compileReport.Rd man/curve_matcher.Rd man/curve_span.Rd man/curves.Rd man/der.Rd man/detect_outliers.Rd man/detect_outliers_negative_cases.Rd man/detect_outliers_positive_cases.Rd man/drc_qc.Rd man/drcs.Rd man/explorer_wl.Rd man/export_pdf.Rd man/export_pngs.Rd man/fct_sync.Rd man/find_layout.Rd man/find_plates.Rd man/flag_samples.Rd man/geom_mean.Rd man/geom_mean_se.Rd man/geom_stat_crossbar.Rd man/getEC50.Rd man/getHillSlope.Rd man/getLowerAsym.Rd man/getUpperAsym.Rd man/getYBounds.Rd man/get_curves.Rd man/get_curves_needing_qc.Rd man/get_ph_metadata.Rd man/get_qc_warnings.Rd man/get_tissue_conc.Rd man/get_warning_message.Rd man/get_warning_message_table.Rd man/ggheat.Rd man/insert_header_addin.Rd man/inverse_predict.Rd man/inverse_predict.drc.Rd man/inverse_predict.lm.Rd man/isobutyryl_curves.Rd man/ll4_qc_warnings.Rd man/ll4_robust_parameter_overlap.Rd man/magpix_express_correct_data.Rd man/make_c3c2.Rd man/make_cis.Rd man/make_fcs.Rd man/make_stats.Rd man/melt_plate.Rd man/melt_plate_xlsx.Rd man/mp_add_metadata.Rd man/mp_dotplot.Rd man/mp_express.Rd man/mp_fit_standards.Rd man/mp_plot.Rd man/mp_predict_concentrations.Rd man/mp_print.Rd man/new_zeros.Rd man/nrmsd_qc.Rd man/nrmsd_qc_negative_cases.Rd man/nrmsd_qc_positive_cases.Rd man/nuc_join.Rd man/pal_magpix_flag.Rd man/pal_pcr_flag.Rd man/par_stats.Rd man/pd.Rd man/ph_color_pal.Rd man/ph_fill_pal.Rd man/poor_ic50_estimate.Rd man/poor_ic50_estimate_negative_cases.Rd man/poor_ic50_estimate_positive_cases.Rd man/read_cfx.Rd man/read_color_layouts.Rd man/read_device_layout.Rd man/read_discards.Rd man/read_fluostar.Rd man/read_generic.Rd man/read_layouts.Rd man/read_magpix.Rd man/read_moldev.Rd man/read_ph_assay.Rd man/read_ph_raw.Rd man/read_smad.Rd man/reexports.Rd man/register_labeller.Rd man/robustify_drc.Rd man/run_qc_check.Rd man/save_explorer_rds.Rd man/serial_dilution.Rd man/tabla.Rd man/theme_assayr.Rd man/tx_run2warning_code.Rd man/unbounded_parameter_ci.Rd man/unbounded_parameter_ci_test_case.Rd man/unsaturated_curve.Rd man/unsaturated_curve_negative_cases.Rd man/unsaturated_curve_positive_cases.Rd
tests/.DS_Store
tests/testthat.R tests/testthat/test_HSTexplorer_QC.R tests/testthat/test_check.R tests/testthat/test_magpix.R tests/testthat/test_model_geoms.R tests/testthat/test_model_tools.R tests/testthat/test_pcr_utils.R tests/testthat/test_purehoney_utils.R tests/testthat/test_readers.R tests/testthat/test_sigmoid.R tests/testthat/test_utils.R vignettes/checking-data.Rmd
hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.