mp_express: High level wrapper to process raw MagPix files.

In hemoshear/assayr2: Tools for analyzing assay data

Description

High level wrapper to process raw MagPix files.

Usage

mp_express(infiles, plate_ids, concentrations, wells_to_omit = NA,
  value = "Net MFI")

Arguments

infiles	Character vector denoting file paths for raw data files
plate_ids	Character vector of plate identifiers (since sometimes, it is not always in order)
concentrations	Optional argument, list where keys are analyte identifiers and values are numeric vectors indicating standard concentrations used.
wells_to_omit	If not NA, a list or equal length to plate_ids with the standard wells to remove. Elements are passed to 'mp_fit_standards(wells_to_omit=...)' individually, so an element of 'NA' will result in no wells being dropped from the corresponding plate.
value	Name of the absorbance value to use ('Median' or 'Net MFI').

Value

MagPix object

Examples

 ## Not run: 
 file <- system.file("extdata", "Magpix_example.csv", package = "assayr2")
 infiles <- c(file, file)
 d <- mp_express(infiles, 1:2)
# If the line above fails, then we might need to pass an extra argument
# for concentrations we can see in the template file
 d <- mp_express(files, 1:2, list('BMP-10' = c(3250, 1083, 361, 120, 40, 13, 4)))

## End(Not run)

hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.