read_cfx: Generic parser for Biorad CFX thermocycler

Description Usage Arguments Value Examples

Description

Reads in the defualt output csv from CFX Manager 3.1.1621.0826 as a tibble.

Usage

1
read_cfx(file, plate_capture = "")

Arguments

file

Path to a BioRad CFX output CSV

plate_capture

A regex pattern with a single capture for extracting plate id from file name.

Value

A data frame with 3 columns (plate, well, cq)

Examples

1
2
3
# example data in assayr2
pcr_file <- system.file("extdata", "CFX_example.csv", package = "assayr2")
pcr_data <- read_cfx(pcr_file)

hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.