NEWS.md

In hemoshear/assayr2: Tools for analyzing assay data

assayr2 0.1.7 2019-11-06

• changed header addin so that some additional information is present.

assayr2 0.1.6 2019-11-05

• added more informative error message to find_plates when no plate layouts can be found in a table.
• added RStudio Addin that can insert a general header for assay analyses.

assayr2 0.1.5 2019-10-31

• fixed bug in read_color_layouts that was causing the gene target to lookup to fail in cases where a target was in row H.
• improved documentation for find_plates.

assayr2 0.1.4 2019-10-25

• fixed bug in box_dl_pure_honey that was causing the function to fail when attempting to find recent plate layouts.

assayr2 0.1.3 2019-10-16

• new function find_plates(), auto-detects plate layouts in an Excel file
• new function read_color_layouts(), a color-smart replacement for read_layouts() (requires library(xls) and thus rJava 👹)
• updates to codebase in response to new behavior of nest()/unnest() in tidyr v1.0.0

assayr2 0.1.2 2019-09-13

• get_tissue_conc() to address PAHT tissue normalization
• box_dl_purehoney has more informative error message when layout does not exist
• find_layout and find_nucs are renamed versions of device_finder() and nuc_finder(), all are still available
• Box finder funcitons now return named vectors where the name is the file name on Box, #49
• Re-factor read_generic() to stop pulling in unwanted rowsm, #46
• read_moldev() gets new plate_capture argument for flexible regex parsing on the fly #39

assayr2 0.1.1 2019-08-25?

• Add snake_names = TRUE argument to read_generic() for better control of column name cleaning
• Re-export snakecase::to_snake_case() #

assayr2 0.1.0 2019-08-06

• geom_stat_crossbar(), geom_stat_text(), geom_stat_label() make the plotting of make_cis(), make_fcs(), and make_stats() results less repetative.
• closest_match() matches multi-alias targets like "CHI3L/YKL40" better.

assayr2 0.0.0.998 2019-07-17

• New interactive functions to help look up device layouts, device_finder() and nuc count RDSs, nuc_finder() with cross project utility via Box search.
• New arguments to apply_curve_matches() to simplify the situation when standards are not matched within each plate run.
• New argument .id added to melt_plate()/melt_plate_xlsx() to allow flexible naming on the fly of well contents.
• box_fetch2() now writes the downloaded file versions CSV relative to the the local_dir arg.

assayr2 0.0.0.997 2019-05-23

• Added make_c3c2() to build C3/C2 ratio from PureHoney data.
• read_fluostar() will raise a warning for saturated measurement values.

assayr2 0.0.0.996

• Exposed value agrument in mp_express() to control which value is parsed.
• Minor bug fixes in read-in functions(read_smad() and read_fluostar()) for consistancy
• register_labeller() works again

assayr2 0.0.0.995

• fct_sync() replaced fct_match() to avoid namespace clash with library(forcats)
• box_fetch2() downloads '.xls' files in addition to '.xlsx'
• box_push2() now works with paths other than the current directory, and no longer support pushing sub-directories.
• get_ph_metadata() is back and fully equipped to handle the newest spreadsheets that Allison and team make.

assayr2 0.0.0.994

• Reworked NAMESPACE to prevent importing of stats::filter()

assayr2 0.0.0.992

• Globally replaced all variables names of 'contents' to to 'content' for joining purposes.
• Adjust leading zero trimming in the read_discards() function.
• Added new measurement to read_moldev() to accomendate live/dead assays
• Removed packaged function to snakecase names in favor of using snakecase::to_snakecase() when needed.

assayr2 0.0.0.991

• Adjust read_generic() to drop columns with only NA values automatically, via the argument dropNA = TRUE.

assayr2 0.0.0.99

• read_fluostar() has a new signititure, closer to read_moldev(). Now it will message the terminal with columns being parsed and no longer does calculations like 'raw1' - 'raw2', instead returning the original columns for user to adjust as needed.

hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.