read_fluostar: Generic parser for data from the Omega FLUOStar plate...

In hemoshear/assayr2: Tools for analyzing assay data

Description

Versatile parser that orders standard columns (ie raw, blank_raw, machine_fit, etc) automatically for rbind()-ing. Verbose with warnings, returns a tibble.

Usage

read_fluostar(file, plate_capture = "", std_concs = NULL,
  measurements = NULL, verbose = TRUE, ...)

Arguments

file	Path to a BMG FLUOstar Omega plate-reader output xlsx.
plate_capture	A regex pattern with a single capture for extracting plate id from file name.
std_concs	A numeric vector of concentrations in descending order. Must be same length as standards in the FLUOstar output file.
measurements	A character specifying the measrements to be extracted from the FLUOstar output file. If 'NULL' (the default), assumes all columns that are not 'Well Row', 'Well Col' and 'Content' are to be parsed as measurments.
verbose	Boolean, should information about parsed columns be printed to the console?
...	Arguments passed to 'read_generic()'

Examples

## Not run: 
# example data in assayr2
fluostar_file <- system.file("extdata", "FLUOstar_ALbumin_example.xlsx", package = "assayr2")
fluostar_data <- read_fluostar(fluostar_file, ".*_(.*)\\..*")

## End(Not run)

hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.