read_smad: Read in SMAD quantification data post ImageJ analysis

Description Usage Arguments Value Examples

Description

Read in SMAD quantification data post ImageJ analysis

Usage

1
2
read_smad(file, uid_capture = ".*plate(.*)\\.tif", keys = NULL,
  return_all = FALSE, ...)

Arguments

file

A txt file containing ImageJ analysis of SMAD staining.

uid_capture

Regex capture expression for extracting UID (plate_well_site) from image names.

keys

Character vector with names of measuements in analysis output. Default is NULL, which will guess whether to use NPC or HEP keys based on number of measurements.

return_all

Boolean, should all intermediate value be returned, useful for debugging.

...

Arguments passed to read_generic().

Value

A long data frame, with values returned for multiple measurements in the cytoplasm and nucleus.

Examples

1
2
3
4
5
6
library(assayr2)
## Not run: 
smad_raw <- system.file("extdata", "SMAD_Quant_example.txt", package = "assayr2")
smad <- read_smad(smad_raw)

## End(Not run)

hemoshear/assayr2 documentation built on Nov. 8, 2019, 6:13 p.m.