stickRAW: Deschutes stickleback raw data.
In hemstrow/snpR: Whole-Genome Analysis Tools for Use with Single Nucleotide Polymorphism Data
stickRAW R Documentation
Deschutes stickleback raw data.
Description
A dataset containing genotypes at 100 SNP loci for 100 Three-spined
Stickleback collected in 2015 from several locations in the Deschutes River,
Oregon, USA. For more information, see Hemstrom et al (in prep).
Usage
stickRAW
Format
An object of class data.frame with 100 rows and 102 columns.
Details
Genotypes noted as two characters representing bases sequenced at a specific
site (e.g. "CC" or "GT"). Each SNP occupies one row, each sample occupies on
column. Missing data coded as "NN".
Column names refer to the population of origin (first three characters) and
the sample ID.
The first three columns contain snp specific meta data:
snp:
SNP ID.
chr: Linkage group, essentially chromosome.
position:
Position of the SNP along the linkage group, in base pairs.
References
Hemstrom et al (in prep)
hemstrow/snpR documentation built on March 20, 2024, 7:03 a.m.
R Package Documentation
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| stickRAW | R Documentation |
Deschutes stickleback raw data.
Description
A dataset containing genotypes at 100 SNP loci for 100 Three-spined Stickleback collected in 2015 from several locations in the Deschutes River, Oregon, USA. For more information, see Hemstrom et al (in prep).
Usage
stickRAW
Format
An object of class data.frame with 100 rows and 102 columns.
Details
Genotypes noted as two characters representing bases sequenced at a specific site (e.g. "CC" or "GT"). Each SNP occupies one row, each sample occupies on column. Missing data coded as "NN".
Column names refer to the population of origin (first three characters) and the sample ID.
The first three columns contain snp specific meta data:
snp: SNP ID.
chr: Linkage group, essentially chromosome.
position: Position of the SNP along the linkage group, in base pairs.
References
Hemstrom et al (in prep)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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