stickSNPs: Deschutes stickleback example snpRdata.

In hemstrow/snpR: Whole-Genome Analysis Tools for Use with Single Nucleotide Polymorphism Data

Deschutes stickleback example snpRdata.

Description

A dataset containing genotypes at 100 SNP loci for 100 Three-spined Stickleback collected in 2015 from several locations in the Deschutes River, Oregon, USA. For more information, see Hemstrom et al (in prep).

Usage

stickSNPs

Format

An object of class snpRdata with 100 rows and 100 columns.

Details

Stored in the snpRdata object class. See import.snpR.data for details.

Genotypes noted as two characters representing bases sequenced at a specific site (e.g. "CC" or "GT"). Each SNP occupies one row, each sample occupies on column. Missing data coded as "NN".

Sample and snp metadata can be found in the sample.meta and snp.meta sockets, respectively.

References

Hemstrom et al (in prep)

hemstrow/snpR documentation built on March 20, 2024, 7:03 a.m.