Coutput-method: Methods defined for S4 class Coutput

In hfang-bristol/dcGOR: Analysis of Ontologies and Protein Domain Annotations

Methods defined for S4 class Coutput

Description

Methods defined for S4 class Coutput.

Usage

## S4 method for signature 'Coutput'
show(object)

## S4 method for signature 'Coutput'
ratio(x)

## S4 method for signature 'Coutput'
zscore(x)

## S4 method for signature 'Coutput'
pvalue(x)

## S4 method for signature 'Coutput'
adjp(x)

## S4 method for signature 'Coutput'
cnetwork(x)

## S4 method for signature 'Coutput'
write(
x,
file = "Coutput.txt",
saveBy = c("adjp", "pvalue", "zscore", "ratio"),
verbose = T
)

Arguments

object	an object of S4 class Coutput. Usually this is an output from dcRWRpipeline
x	an object of S4 class Coutput. Usually this is part of the output from dcRWRpipeline
file	a character specifying a file name written into. By default, it is 'Coutput.txt'
saveBy	which statistics will be saved. It can be "pvalue" for p value, "adjp" for adjusted p value, "zscore" for z-score, "ratio" for ratio
verbose	logical to indicate whether the messages will be displayed in the screen. By default, it sets to true for display

Value

write(x) also returns a symmetrix matrix storing the specific statistics

See Also

Coutput-class

hfang-bristol/dcGOR documentation built on July 16, 2022, 6:43 p.m.