dcSplitArch: Function to obtain a list of features via splitting an input...

In hfang-bristol/dcGOR: Analysis of Ontologies and Protein Domain Annotations

Function to obtain a list of features via splitting an input architecture

Description

dcSplitArch is supposed to obtain a list of features via splitting an input architecture.

Usage

dcSplitArch(
da,
feature.mode = c("supra", "individual", "comb"),
sep = ",",
ignore = "_gap_",
verbose = T
)

Arguments

da	an input architecture. For example, a comma-separated string
feature.mode	the mode of how to define the features thereof. It can be: "supra" for combinations of one or two successive domains (including individual domains; considering the order), "individual" for individual domains only, and "comb" for all possible combinations (including individual domains; ignoring the order)
sep	a character string to separate. By default, it is comma ','
ignore	a character string to ignore. By default, it is '_gap_'. Ihis ignored character will affect the features defined as being 'supra' (see examples below)
verbose	logical to indicate whether the messages will be displayed in the screen. By default, it sets to TRUE for display

Value

a vector containing splitted features.

Note

none

See Also

dcAlgo, dcAlgoPredict

Examples

da <- "_gap_,100895,57610,_gap_,57610,47473"
# get features defined as being "supra"
dcSplitArch(da, feature.mode="supra")
# get features defined as being "individual"
dcSplitArch(da, feature.mode="individual")
# get features defined as being "comb"
dcSplitArch(da, feature.mode="comb")

hfang-bristol/dcGOR documentation built on July 16, 2022, 6:43 p.m.