Man pages for hferg/bayestraitr
A set of tools to help with the interpretation and analysis of the output of BayesTraits MCMC analyses.
| autoplot.bt_post | An autoplot (ggplot2) method for objects of class "bt_post".... |
| bayestraitr | A package that makes it easier to process and analyse the... |
| compareStones | compareStones |
| compPosts | compPosts |
| createCounts | createCounts Creates the counts table for the rjpp. |
| findRateShifts | findRateShifts |
| findShifts | findShifts |
| findTransShifts | findTransShifts |
| getDescs | getDescs |
| getMRCAbtr | getMRCAbtr |
| getParams | getParams |
| getPL | getPL Gets the path length from the root to the position of a... |
| getPostStats | getPostStats |
| getStones | getStones |
| getTaxa | getTaxa |
| getTipNames | getTipNames |
| ggAutoCor | ggAutoCor |
| ggDens | ggDens |
| ggHist | ggHist |
| ggRunmean | ggRunmean |
| ggTrace | ggTrace |
| hello | Hello, World! |
| isDefined | is.defined |
| loadPosterior | loadPosterior |
| loadRJ | loadRJ |
| localDelta | localDelta |
| localEB | localEB |
| localKappa | localKappa |
| localLambda | localLambda |
| localRate | localRate |
| makeTrans | makeTrans |
| mcmcPlots | mcmcPlots |
| meanBranches | meanbranches |
| modeStat | modeStat Calculate the mode. |
| multiplot | Multiple plot function |
| multiplyNodes | multiplyNodes Works out the cumulative effect of linear... |
| paramLh | paramLh |
| plot.bt_post | A plot method for the class "bt_post" that invokes the... |
| plotPhylo | plotPhylo |
| plotShifts | plotShifts |
| rateShifts | rateShifts Generates the edge colours to colour edges by... |
| rjParamCount | rjParamCount |
| rjpp | rjpp |
| scalarSearch | scalarSearch Searches through the posterior of an RJ... |
| smartBind | smartBind |
| summariseModelString | summariseModelString |
| transShifts | transShifts Generates the node labels, edge.colours and... |
| treeTrans | treeTrans |
| viewLogfile | viewLogfile |
| zeroTest | zeroTest |
