paramLh: paramLh

In hferg/bayestraitr: A set of tools to help with the interpretation and analysis of the output of BayesTraits MCMC analyses.

Description

Plots a parameter against the likelihood for each iteration.

Usage

paramLh(logfile, pars, cols = 2, thinning = 1, burnin = 0)

Arguments

logfile	The name of the logfile of the BayesTraits run
pars	A vector of the names of the parameters to be plotted against likelihood.
cols	The number of columns of the resultant plot (if more than one plot)
thinning	Thinning parameter for the posterior - defaults to 1 (all samples). 2 uses every second sample, 3 every third and so on.
burnin	The number of generations to remove from the start of the chain as burnin.

Examples

paramsLh("cool-data.log", "Lambda")
paramsLh("cool-data.log", getParams("cool-data.log"))
params <- getParams("cool-data.log")
paramLh("cool-data.log", params[c(2:4)])

hferg/bayestraitr documentation built on May 28, 2019, 8:55 p.m.