Man pages for hferg/hfgr
| asymmTree | asymmTree |
| branchChangeSim | branchChangeSim Simulate the expected change along a branch... |
| cladeChangeSim | cladeChangeSim Simulates the expected change along all... |
| createCountsTable | #' A bunch of internal functions for hfgr, mostly for the... |
| findBranches | findBranches Finds the branch numbers that descend from a... |
| getCovProbs | getCovProbs A function to return the probabilities of... |
| getDescs | getDesc |
| getMLparams | getMLparams |
| getPL | getPL Gets the path length from the root to the position of a... |
| getTipNames | getTipNames |
| ggplotShareLeg | ggplotShareLeg |
| gLegend | gLegend |
| hfgr | A package of personally useful functions. |
| isDefined | is.defined |
| lmEq | lmEq |
| loadLibs | loadLibs |
| loadRJ | loadRJ |
| loadRJdisc | loadRJdisc |
| localDelta | localDelta |
| localEB | localEB |
| localKappa | localKappa |
| localLambda | localLambda |
| localRate | localRate |
| localscalarPP | localscalarPP |
| localscalarPP2 | localscalarPP2 |
| makeTransparent | makeTransparent |
| massLh | massLh |
| meanBranches | meanbranches |
| modeStat | modeStat Calculate the mode. |
| multiplot | Multiple plot function |
| niceHist | niceHist |
| phyloHeights | phyloHeights |
| plotPhylo | plotPhylo |
| plotShits | plotShifts |
| posthocZ | posthocZ |
| readDiscMaps | readDiscMaps |
| readPP | readPP |
| readSimInfo | readSimInfo A function that will read the simulation details... |
| repData | repData |
| RJbranchScalar | RJbranchScalars A function that takes the output of a kappa,... |
| significantTransformation | significantTransformation |
| simDepIndep | simDepIndep |
| simOverTrees | simOverTrees This function will simulate the expected change... |
| simTreeClades | simTreeClades |
| simuDatEB | simuDatEb |
| simuDatLambda | simuDatLambda |
| simuDatRate | simuDatRate |
| simulateFlips | simuleteFlips |
| smartBind | smartBind |
| symmTree | symmTree |
| testDelta | testDelta |
| treeTrans | treeTrans |
