Simulate data over a phylogeny, or sub section of a phylogeny, in order to reflect variable rates. Based on adding a constant to the tip data branch by branch and weighting by branch length and does not need to stretch the phylogeny.
1 2 | simuDatRate(tree, transtree = NULL, node, a, sig, dat = NULL,
method = "recursive", standardise = FALSE)
|
tree |
The tree that data is simulated on. |
transtree |
If you want to simulate data using a transformed tree to derive branch lengths, then this is where that tree goes. Defaults to NULL. |
node |
The node at which to make the changes. |
a |
The constant that is weighted by branch length and added to the data at the tips. Once the relationship between scalar and this is known, this can be scalar |
sig |
The standard deviation of the random component of the BM simulation. NOT sigma squared. |
dat |
If you want to use some data you already have and change it this way, put it here. |
method |
Either add values recursively by tail branch length (default), or alternative "path" - which adds values proportional to total path length. |
standardise |
Logical, whether or not to z-standardise the data. Defaults to FALSE. |
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