cladeChangeSim Simulates the expected change along all branches of a defined clade.
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tree |
The time tree over which to simulate change. |
reftree |
A reference tree that may have divergent branch lengths compared the the time tree (for example, a rate scaled tree) |
node |
The node from which the simulation starts (defaults to root) |
plot |
Plot the sim to screen after running? |
lead |
Include the leading branch in the simulation? |
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