cladeChangeSim: cladeChangeSim Simulates the expected change along all...

Description Usage Arguments

Description

cladeChangeSim Simulates the expected change along all branches of a defined clade.

Usage

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cladeChangeSim(tree, reftree = NULL, node = "root", mode = "BM",
  directional = "non", startval = 0, sigsq, plot = FALSE,
  increment = NULL, segments = FALSE, lead = FALSE)

Arguments

tree

The time tree over which to simulate change.

reftree

A reference tree that may have divergent branch lengths compared the the time tree (for example, a rate scaled tree)

node

The node from which the simulation starts (defaults to root)

plot

Plot the sim to screen after running?

lead

Include the leading branch in the simulation?


hferg/hfgr documentation built on May 17, 2019, 3:56 p.m.