R/metabCombiner_package_doc.R

In hhabra/metabCombiner: Method for Combining LC-MS Metabolomics Feature Measurements

#' @title metabCombiner: Disparate LC-MS Metabolomics Feature Alignment
#'
#' @description Takes two untargeted metabolomics feature lists (consisting of
#' m/z, rt, & sample intensity measurements, plus optional identifiers & adduct
#' labels) and outputs a merged feature list consisting of potential compound
#' matches, ranked by a similarity score for groups of features. Inputs are
#' assumed to be derived from biologically similar samples analyzed with a
#' similar analytical method.
#'
#' @docType package
#'
#' @useDynLib metabCombiner
#' @import dplyr
#' @importFrom graphics plot lines
#' @importFrom stats loess loess.control predict setNames na.omit
#' @importFrom S4Vectors isSorted
#' @importFrom methods new is
#' @importFrom utils read.csv read.delim write.table head
#' @importFrom caret createFolds
#' @importFrom rlang .data
#' @importFrom matrixStats rowCounts rowMedians rowMeans2
#' @importFrom tidyr unite
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