pathprint.Dr.gs: Pathprint genesets - D. rerio
In hidelab/pathprint: Pathway fingerprinting for analysis of gene expression arrays
Description
Usage
Details
Source
References
Examples
Description
Pathways and genesets used by pathprint for D. rerio arrays, referenced
by Entrez Gene ID
Usage
1
Details
Gene sets were inferred by homology from the human genesets,
pathprint.Hs.gs,
using the HomoloGene database, www.ncbi.nlm.nih.gov/homologene
Source
O. Hofmann
References
Sayers et al. Database resources of the National Center for Biotechnology
Information. Nucleic Acids Research (2011) vol. 39 (Database issue) pp. D38-51
Altschuler, G. M., O. Hofmann, I. Kalatskaya, R. Payne, S. J. Ho Sui,
U. Saxena, A. V. Krivtsov, S. A. Armstrong, T. Cai, L. Stein
and W. A. Hide (2013). "Pathprinting: An integrative approach to understand
the functional basis of disease." Genome Med 5(7): 68.
Examples
1
2
data("pathprint.Dr.gs")
pathprint.Dr.gs[grep("ZN175_7728", names(pathprint.Dr.gs))]
hidelab/pathprint documentation built on May 17, 2019, 3:57 p.m.
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Description Usage Details Source References Examples
Description
Pathways and genesets used by pathprint for D. rerio arrays, referenced by Entrez Gene ID
Usage
1 |
Details
Gene sets were inferred by homology from the human genesets,
pathprint.Hs.gs,
using the HomoloGene database, www.ncbi.nlm.nih.gov/homologene
Source
O. Hofmann
References
Sayers et al. Database resources of the National Center for Biotechnology
Information. Nucleic Acids Research (2011) vol. 39 (Database issue) pp. D38-51
Altschuler, G. M., O. Hofmann, I. Kalatskaya, R. Payne, S. J. Ho Sui,
U. Saxena, A. V. Krivtsov, S. A. Armstrong, T. Cai, L. Stein
and W. A. Hide (2013). "Pathprinting: An integrative approach to understand
the functional basis of disease." Genome Med 5(7): 68.
Examples
1 2 | data("pathprint.Dr.gs")
pathprint.Dr.gs[grep("ZN175_7728", names(pathprint.Dr.gs))]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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