R/Goodrich.R

In himelmallick/BayesRecipe: Bayesian Reciprocal Regularization

#' Microbiome taxonomy dataset from Zhou and Gallins (2019).
#' 
#' 16S genus-level abundances of 99 OTUs related to BMI in n = 414 human subjects, 
#' as described in Goodrich et al. (2014).
#'
#' @docType data
#'
#' @usage data(Goodrich)
#'
#' @format A data frame of taxonomic abundances of 99 OTUs in n = 414 human subjects. 
#' From a pool of 11,225 candidate features, OTUs were collapsed to the genus level 
#' by summing their respective relative abundances, discarding any OTUs 
#' which were unannotated at the genus level.
#' 
#' @references Zhou Y, Gallins D (2019). A Review and Tutorial of Machine Learning Methods for 
#' Microbiome Host Trait Prediction. Frontiers in Genetics 10, 579.
#' 
#' @references Goodrich JK et al. (2014). Human Genetics Shape the Gut Microbiome. Cell 159(4): 789-799.
"Goodrich"